Day-2/Tuesday program details

Details : Day-1/Mon | Day-2/Tue | Day-3/Wed | Day-4/Thrs | Day-5/Fri (satellite meeting)

Day-2  Program Details (View at a glance)

Tuesday, August 2, 2016

8:00am onwards

Conference registration opens


Breakfast + Poster setup (Look for the Poster #)

Room 110ABC


Dr. Pankaj Jaiswal, ICBO 2016 Conference Chair & Associate Prof. Oregon State University
Prof. Daniel (Dan) Arp, Dean, College of Agricultural Sciences, Oregon State University

Room 110ABC

Keynote Address

Chairs: Pankaj jaiswal and Pier Luigi Buttigieg

Challenges In Mapping the Nation's Climate and Weather: Every day, Everywhere
Prof. Christopher (Chris) Daly, Oregon State University


Coffee Break + Poster setup (Look for the Poster #)

Room 110ABC

Joint ICBO and BioCreative Plenary Session #1 (Special Topic)

Natural Language Processing & Data Mining with Ontologies

Chairs: Cecilia Arighi and Pankaj Jaiswal

10:30am-11:00am BIT101: Large-scale Semantic Indexing with Biomedical Ontologies (Donald Comeau, NCBI, National Institutes of Health, USA)
11:00am-11:15am BIT102: One tagger, many uses: Illustrating the power of ontologies in dictionary-based named entity recognition (Lars Juhl Jensen, NNF Center for Protein Research, Denmark)
11:15am-11:45am BIT103: Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology (Karen Ross, Georgetown University, USA)
11:45am-12:00pm BIT104: Cardiovascular Health and Physical Activity: A Model for Health Promotion and Decision Support Ontologies (Vimala Ponna, UC Davis, USA)
12:00pm-12:15pm BIT105: A Web Application for Extracting Key Domain Information for Scientific Publications using Ontology (Weijia Xu, Texas Advanced Computing Center, University of Texas at Austin, USA)
12:15pm-12:30pm BIT106: Use of text mining for Experimental Factor Ontology coverage expansion in the scope of target validation (Senay Kafkas, Wellcome Trust Genome Campus, UK)


Lunch + Posters (Look for the Poster #)

Room 110ABC

ICBO Plenary session #2 (Special Topic)

SDGIO: Sustainable Development Goals Interface Ontology--Semantics for Sustainability

Chairs: Mark Jensen, Barry Smith and Pier Buttigieg

1:30pm-1:50pm IT201: Environmental semantics for sustainable development in an interconnected biosphere (Pier Buttigieg)
1:50pm-2:10pm IT202: Sustainable development of the Sustainable Development Goals Interface Ontology (Mark Jensen)
2:10pm-2:30pm IT203: Defining and sustaining populations and communities (Ramona Walls)
2:30pm-2:50pm IT204: A sustainable approach to knowledge representation in the domain of sustainability: bridging SKOS and OWL (Chris Mungall)
2:50pm-3:10pm IT205: Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics (Medha Devare)
3:10pm-3:30pm IT206: Closing comments: The UNEP Ontologies and the OBO Foundry (Barry Smith)


Coffee Break + Poster setup (Look for the Poster #)

Room 110ABC

ICBO Plenary session #3

  • Invited Talks (4-5pm)
    Chair: Pankaj Jaiswal
4:00pm-4:30pm Microbiomes, metagenomes, and informatic techniques to characterize the uncultured biosphere (Thomas Sharpton, Oregon State University)
4:30pm-5:00pm Pattern and process in the emergence and elimination of infectious diseases: challenges and opportunities for big data (Benjamin Dalziel, Oregon State University)
  • Flash Talks  (5-6pm) (Look for the order and Poster #)
    Chairs: Laurel Cooper and Sivaram Arabandi
    • By all Poster presenters (1.5 min each poster | two slides only: One title and one content slide)

Room 110ABC

Posters and Demo Session #2

  • POSTERS: All ICBO Posters + BioCreative (if any)
  • DEMO
    • D201: Ontobull and BFOConvert: Web-based programs to support automatic ontology conversion (Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He)
    • D202: Reusing the NCBO BioPortal technology for agronomy to build AgroPortal (Clement Jonquet)
    • D203: Humane OWL: RDF and OWL for Humans (James Overton)
    • BIT101-D204: Large-scale Semantic Indexing with Biomedical Ontologies (Chih-Hsuan Wei, Robert Leaman, Zhiyong Lu)
    • D205: Easy Extraction of Terms and Definitions with OWL2TL (John Judkins, Joseph Utecht, Mathias Brochhausen)

Lobby/ Room 110ABC

Evening Mixer